# This code is part of a Qiskit project.
#
# (C) Copyright IBM 2018, 2023.
#
# This code is licensed under the Apache License, Version 2.0. You may
# obtain a copy of this license in the LICENSE.txt file in the root directory
# of this source tree or at http://www.apache.org/licenses/LICENSE-2.0.
#
# Any modifications or derivative works of this code must retain this
# copyright notice, and modified files need to carry a notice indicating
# that they have been altered from the originals.
""" Psi4 Driver """
from __future__ import annotations
import logging
import os
import subprocess
import tempfile
from pathlib import Path
from typing import Any
from qiskit_nature import QiskitNatureError
from qiskit_nature.exceptions import UnsupportMethodError
from qiskit_nature.units import DistanceUnit
from qiskit_nature.second_q.problems import ElectronicBasis, ElectronicStructureProblem
from qiskit_nature.second_q.formats.molecule_info import MoleculeInfo
from qiskit_nature.second_q.formats.qcschema import QCSchema
from qiskit_nature.second_q.formats.qcschema_translator import qcschema_to_problem
import qiskit_nature.optionals as _optionals
from ..electronic_structure_driver import ElectronicStructureDriver, MethodType, _QCSchemaData
logger = logging.getLogger(__name__)
[ドキュメント]@_optionals.HAS_PSI4.require_in_instance
class Psi4Driver(ElectronicStructureDriver):
"""
Qiskit Nature driver using the Psi4 program.
See http://www.psicode.org/
"""
def __init__(
self,
config: str
| list[
str
] = "molecule h2 {\n 0 1\n H 0.0 0.0 0.0\n H 0.0 0.0 0.735\n no_com\n no_reorient\n}\n\n"
"set {\n basis sto-3g\n scf_type pk\n reference rhf\n",
) -> None:
"""
Args:
config: A molecular configuration conforming to Psi4 format.
Raises:
QiskitNatureError: Psi4 Driver configuration should be a string or list of strings.
"""
super().__init__()
if not isinstance(config, str) and not isinstance(config, list):
raise QiskitNatureError(
f"Psi4 Driver configuration should be a string or list of strings:'{config}'."
)
if isinstance(config, list):
config = "\n".join(config)
self._config = config
self._qcschemadata = _QCSchemaData()
[ドキュメント] @staticmethod
@_optionals.HAS_PSI4.require_in_call
def from_molecule(
molecule: MoleculeInfo,
basis: str = "sto3g",
method: MethodType = MethodType.RHF,
driver_kwargs: dict[str, Any] | None = None,
) -> "Psi4Driver":
"""Creates a driver from a molecule.
Args:
molecule: the molecular information.
basis: the basis set.
method: the SCF method type.
driver_kwargs: keyword arguments to be passed to driver.
Returns:
The constructed driver instance.
Raises:
QiskitNatureError: when an unknown unit is encountered.
"""
# Ignore kwargs parameter for this driver
del driver_kwargs
Psi4Driver.check_method_supported(method)
basis = Psi4Driver.to_driver_basis(basis)
if molecule.units == DistanceUnit.ANGSTROM:
units = "ang"
elif molecule.units == DistanceUnit.BOHR:
units = "bohr"
else:
raise QiskitNatureError(f"Unknown unit '{molecule.units.value}'")
name = "".join(molecule.symbols)
geom = "\n".join(
[
name + " " + " ".join(map(str, coord))
for name, coord in zip(molecule.symbols, molecule.coords)
]
)
cfg1 = f"molecule {name} {{\nunits {units}\n"
cfg2 = f"{molecule.charge} {molecule.multiplicity}\n"
cfg3 = f"{geom}\nno_com\nno_reorient\n}}\n\n"
cfg4 = f"set {{\n basis {basis}\n scf_type pk\n reference {method.value}\n}}"
return Psi4Driver(cfg1 + cfg2 + cfg3 + cfg4)
[ドキュメント] @staticmethod
def to_driver_basis(basis: str) -> str:
"""Converts basis to a driver acceptable basis.
Args:
basis: The basis set to be used.
Returns:
A driver acceptable basis.
"""
if basis == "sto3g":
return "sto-3g"
return basis
[ドキュメント] @staticmethod
def check_method_supported(method: MethodType) -> None:
"""Checks that Psi4 supports this method.
Args:
method: the SCF method type.
Raises:
UnsupportMethodError: If the method is not supported.
"""
if method not in [MethodType.RHF, MethodType.ROHF, MethodType.UHF]:
raise UnsupportMethodError(f"Invalid Psi4 method {method.value}.")
[ドキュメント] def run(self) -> ElectronicStructureProblem:
cfg = self._config
psi4d_directory = Path(__file__).resolve().parent
template_file = psi4d_directory.joinpath("_template.txt")
input_text = [cfg]
file_fd, hdf5_file = tempfile.mkstemp(suffix=".hdf5")
os.close(file_fd)
input_text += [f'_FILE_PATH = "{Path(hdf5_file).as_posix()}"']
with open(template_file, "r", encoding="utf8") as file:
input_text += [line.strip("\n") for line in file.readlines()]
file_fd, input_file = tempfile.mkstemp(suffix=".inp")
os.close(file_fd)
with open(input_file, "w", encoding="utf8") as stream:
stream.write("\n".join(input_text))
file_fd, output_file = tempfile.mkstemp(suffix=".out")
os.close(file_fd)
try:
Psi4Driver._run_psi4(input_file, output_file)
if logger.isEnabledFor(logging.DEBUG):
with open(output_file, "r", encoding="utf8") as file:
logger.debug("Psi4 output file:\n%s", file.read())
finally:
run_directory = os.getcwd()
for local_file in os.listdir(run_directory):
if local_file.endswith(".clean"):
os.remove(run_directory + "/" + local_file)
try:
os.remove("timer.dat")
except Exception: # pylint: disable=broad-except
pass
try:
os.remove(input_file)
except Exception: # pylint: disable=broad-except
pass
try:
os.remove(output_file)
except Exception: # pylint: disable=broad-except
pass
self._qcschemadata = _QCSchemaData.from_hdf5(hdf5_file)
try:
os.remove(hdf5_file)
except Exception: # pylint: disable=broad-except
pass
return self.to_problem()
[ドキュメント] def to_qcschema(self, *, include_dipole: bool = True) -> QCSchema:
"""Extracts all available information after the driver was run into a :class:`.QCSchema`
object.
Args:
include_dipole: whether to include the custom dipole integrals in the QCSchema.
Returns:
A :class:`.QCSchema` storing all extracted system data computed by the driver.
"""
return Psi4Driver._to_qcschema(self._qcschemadata, include_dipole=include_dipole)
[ドキュメント] def to_problem(
self,
*,
basis: ElectronicBasis = ElectronicBasis.MO,
include_dipole: bool = True,
) -> ElectronicStructureProblem:
return qcschema_to_problem(
self.to_qcschema(include_dipole=include_dipole),
basis=basis,
include_dipole=include_dipole,
)
@staticmethod
def _run_psi4(input_file, output_file):
process = None
try:
with subprocess.Popen(
[_optionals.PSI4, input_file, output_file],
stdout=subprocess.PIPE,
universal_newlines=True,
) as process:
stdout, _ = process.communicate()
process.wait()
except Exception as ex:
if process is not None:
process.kill()
raise QiskitNatureError(f"{_optionals.PSI4} run has failed") from ex
if process.returncode != 0:
errmsg = ""
if stdout is not None:
lines = stdout.splitlines()
for line in lines:
logger.error(line)
errmsg += line + "\n"
raise QiskitNatureError(
f"{_optionals.PSI4} process return code {process.returncode}\n{errmsg}"
)